All in the family

Credit: M.F. Bonnan via "I f***ing love science (on Facebook).

Credit: M.F. Bonnan via “I f***ing love science (on Facebook).

Yes, exactly! A significant percentage of the population (cough, creationists, cough) doesn’t understand that the evolutionary relationships between species is a lot like that between extended family members; just over a much longer time scale. Phylogeny is primarily a branching (family) tree-like pattern, not a single file, ladder-like, progression (cladogenesis vs. anagenesis).


Addendum: It has been pointed out to me that the cartoons depiction of a family “tree” superimposed on a cladogram is somewhat inapt and I absolutely agree that the cartoon is by no means a perfect analogy (comparing speciation, species giving rise to new species, with two parents coming together and bearing children). However, I think it gets the idea across much better than the linear iconography that has become so entrenched in peoples minds. Especially, I think, concerning the relationships between fairly closely related species like between chimps and humans. People incorrectly tend to think of humans as somehow being directly descended from chimps rather than our being “cousins” descended from a common “grandparent” (that was probably somewhat chimp-like in appearance).


Once you grok this fact you will understand what is fundamentally wrongheaded about questions like: “If humans evolved from [share a common ancestor with] apes why are there still apes?”

This sort of question is, except for the timescale involved, just like asking: “If you and your cousin share a common ancestor (grandmother), how can you both exist at the same time?”

Understanding this also answers the common creationist objection against many transitional fossil series based on species overlapping in time. For example:

“Early” horses have been preserved in strata from the same evolutionary age as several ‘”later” horses

Hyracotherium/Eohippus and Orohippus do for instance appear in the fossil record at the same time as Epihippus. Mesohippus and Miohippus appear together with Merychippus and Parahippus. Almost all other horses (with a possible exception of one or two)—Parahippus, Merychippus, Pliohippus, Equus and possibly also Miohippus—are represented at the same time during much of the period when they have been found as fossils.16 (But especially in the newer evolutionary schemes, different names have been given to very similar animals, giving the appearence of evolution as well as providing fame to their discoverers; see examples in Froehlich 20029 and MacFadden 20054). Fossils of Hyracotherium (sic) have also been found very high up in the strata (Pliocene), but these findings have been rejected as reworked (i.e. eroded and deposited at a later strata) in spite of the fact that the geological observations do not show any signs of disturbance.17 Thus, the fact that most of the horses lived almost at the same time undermines their proposed evolution. (Molén, 2009, emphasis mine)

Buzzzt, sorry but that is incorrect, thank you for playing, here is a home version of our game as a consolation prize.*

The coexistence of two genera of horses does nothing to undermine their evolutionary relationship any more than your grandparent or cousin coexisting with you undermines your familial relationship.

Evolution does not require that a parent species become extinct after a speciation event (after it gives “birth” to a new daughter species) nor does it require that once two lineages split apart that both will change at the same rate or in the same direction.

Fossil species A could be directly ancestral to species B, persisting relatively unchanged after the two lineages have split. Or species A could be a cousin to species B that only strongly resembles an as yet undiscovered common grandparent species. Such distinction are very difficult to make in fossil organisms.

[* Note: This is not even close to a comprehensive dissection of the problems with quoted article or even this paragraph.]

Reference

Molén, Mats (2009) “The evolution of the horse“, Journal of Creation 23(2):59–63 (downloaded on 9-14-2013)

The Carnival of Evolution #59 is up!

Yes, the Carnival of Evolution LIX is up and waiting for your visit from wherever in the nigh on infinite reaches of time/space you might happen to be reading this from. This month it is being hosted at DNA Barcoding, and is titled “A letter from the Doctor”.

Now go check it out or the Daleks will win!I have been shamefully neglectful of my participation of the Carnival of Evolution but all the previous installments can be found here. If you missed any of these you’ll definitely want to go check them out as well!

Of Pandas and Pigeons

I have had the honor of being invited to join the crew over at Panda’s Thumb, the premier counter creationism blog on the interwebs and have gladly accepted.

Your truly with a Prof. Steve Steve impersonator.

Fear not my minions (all 5 or 6 of you), Playing Chess with Pigeons is not going anywhere! This is will remain the focus of my blogging. Little things here; big things here but cross posted to Panda’s Thumb as well (more traffic, more better!).

Thanks to the Panda’s people for having me, I hope to live up to the honor.

The Carnival of Evolution #50 is up!

That’s right the Carnival of Evolution has reached the big 50 and it’s rarin’ to go with The Teaching Edition!

So go with the flow and go, go, go on over to Marc Srour’s blog Teaching Biology!

The Carnival of Evolution, like a fine wine, gets better with age…

Previous Carnivals of Evolution:

If you missed any of these you’ll definitely want to go check them out!

Answering feedback on Haeckel’s embryo drawings

A commenter named Brad, who is apparently a creationist, left a comment to one of my recent posts.  In that post, “Creationist foists “fraudulent” embryo picture on his readers“, I talked about how creationist Brian Thomas ironically used a biologically inaccurate picture of a human embryo to illustrate his article in which he denies the evidence for evolution from developmental biology and implies that all such evidence is based on the supposedly fraudulent embryo drawings 19th century biologist Ernst Haeckel.

Not wanting it to be neglected in the comments section, I have moved my response to Brad up to a full post.

Brad: Wow, evolution is like magic. It turns gills into ears, tonsils, and glands (and part of the larynx).

There is no magic involved in evolution, you’re thinking of creationism, the very heart of which is the claim that living things are the miraculous creations of a supernatural being.

Brad: Calculate the odds…

Since by all available evidence it did in fact happen, the odds are 100%.

Brad: Granted, it was a bad choice with the stock photo; however, that’s possibly an oversight vs. the intentional use of known fraudulent drawings for decades in school textbooks.

I would suggest that it was an “oversight” brought on by ignorance of the subject and a lack of curiosity to even check. As for the recycling of Haeckel’s embryo illustrations in textbooks (as illustrations of evidence rather than as a historical reference) this due to the regrettable and all too common laziness on the part of textbook publishers who often recycle not just images but even language as well. See: Stephen Jay Gould’s essay “The Case of the Creeping Fox Terrier Clone” (Gould 1991).

I agree that some* of Haeckel’s drawings exaggerated overall similarity of the embryos they depict and that more accurate illustrations should be used. However, I am unaware of any fundamental anatomical inventions in the illustrations that if corrected would affect the evidence from comparative embryology for evolution.

So, please explain in your own words exactly what anatomical details were altered in Haeckel’s drawings that created evidence for evolution where none exists in actual vertebrate embryos.

Remember, specific anatomical details and in your own words. I don’t want quotes of vague generalities from other people. You’ll note that in my post on pharyngeal clefts at no point did simply I quote some scientists opinion that the pharyngeal apparatus of amniote embryos are homologous to the pharyngeal apparatus of “fish”. Instead I pointed to the anatomical and genetic evidence for this.

If you are going to argue against this, then you are going to have to do likewise.  And if you want to present an alternative scientific explanation you are going to have to present something that is logical, coherent, makes reference to the empirical evidence at hand and does not rely on untestable miracles or divine fiat.

Brad: O’Rahilly and Müller stated that ‘the pharyngeal clefts of vertebrate embryos … are neither gills nor slits’.1

I don’t have this reference handy and I don’t know when I’ll get a chance to get to my local university’s science library (whose website says they have it) I was able to find a later edition on Amazon with a free preview which allowed me to get what seems like the relevant section.  If the older edition has any important differences please let me know (assuming you have the book and didn’t just cut and past the quote from a creationist and/or anti-abortion website).

Here is the the section which seem to contain Brad’s quote with the part Brad quoted in red:

Recapitulation, the So-Called Biogenetic Law.

The theory that successive stages of individual development (ontogeny) correspond with (“recapitulate”) successive adult ancestors in the line of evolutionary descent (phylogeny) became popular in the nineteenth century as the so-called biogenetic law. This theory of recapitulation, however, has had a “regrettable influence on the progress of embryology” (G. de Beer). The work of Carl Ernst von Baer in 1828 was much closer to the mark. According to the “laws” of von Baer, general characters (e.g., brain, notochord) appear in development earlier than special characters (e.g., limbs, hair). Furthermore, during its development an animal departs more and more from the form of other animals. Indeed, the early stages in the development of an animal are not like the adult stages of other forms but resemble only the early stages of those animals. The pharyngeal clefts of vertebrate embryos, for example, are neither gills nor slits. Although a fish elaborates this region into gill slits, in reptiles, birds, and mammals it is converted into such structures as the tonsils and the thymus. According to the hourglass model of evolutionary development, a conserved pattern of developmental gene expression is linked with considerable resemblance among embryos of different species at a constricted phase, whereas divergence is found earlier and later. Morphological evidence for such a phase, however, is unconvincing (Richardson et al., 1997). (O’Rahilly & Müller 2001, p. 16)

Although there are issues I could take with their description of recapitulation as necessarily being about a strict correspondence between embryos and the adult forms of ancestors or with the short shrift they give the concept of the phylotypic stage (at least in this paragraph), however those are really nuanced points that are not necessary to get into here.

One point I will quibble with regards the presence of slits in certain amniote embryos.

Everything I have seen on the subject indicates that the pharyngeal clefts of some “reptiles” and birds do normally perforate during development and are therefore technically “slits” for a short time before they re-close. This also sometimes occurs in mammals, including humans, though it is not a normal condition. (see my earlier article for links). Also they’ve left out any reference to the larvae of amphibians some of which do develop functional gill slits.

Beyond that, they are absolutely correct, the pharyngeal apparatus of amniotes never function as gills and as I said in one of my earlier posts, I don’t know of any biologist who has ever claimed that they do, save one, the creationist Louis Agassiz.

The Great Satan, Ernst Haeckel, stated in no uncertain terms in his writings that these structures never function as respiratory organs in amniote embryos.

It is not required that the pharyngeal apparatus of amniote embryo function as gills for them to be evidence—not absolute, stand alone proof, but evidence—of their ancestors aquatic nature any more than it is necessary for the hind limb buds of whale embryos to function as working legs for them to be evidence that their ancestors once walked on land.

Brad: Blechschmidt is more forceful, concluding that ‘the so-called basic law of biogenetics is wrong.

The late Erich Blechschmidt (1904-1992) was a scientific outlier (as are some of his followers, i.e. Brian Freeman). That is his views were not representative of developmental biologists as a whole. Creationists love to quote Blechschmidt and other outliers such as Alan Feduccia (who denies that birds are descended from dinosaurs) and Charles Oxnard (who denies that australopithecines are human ancestors) in an attempt to make it seem as if they are tapping into some real controversy amongst scientists. In reality they are just quoting people who are only slightly less on the fringe of science than themselves.

You can find someone with an advanced degree that will say just about anything. For example there is PhD astronomer (and creationist) Gerardus Bouw who argues that the Earth is the center of the solar system.

In this case Blechschmidt (and Freeman) seem to be the source for creationists absurd argument that pharyngeal clefts are merely “flexion folds” caused by the bending of the embryonic neck (Freeman 2001).

As for the biogenetic law, no one is arguing for that. If you read the article you were commenting under you would have seen that I quoted Michael Richardson (a critic of Haeckel) as saying that there are studies which support the recapitulation of individual character transformations, just not whole ancestral stages (Richardson & Keuck 2002, p. 522)

Brad: ” ‘No buts or ifs can mitigate this fact.’ He adds that the gill stage myth is ‘not even a tiny bit correct or correct in a different form…It is totally wrong’. 2 This view is shared by many mainstream embryologists.

No, it is not.

Although among the strongest opponents to Haeckel in recent years, and favourably differing from him by a paramount respect for detail, Blechschmidt resembled Haeckel in several respects: they both were intrepid and very persuasive defenders of their views, they were both artists at heart – witness Haeckel’s illustrations and Blechschmidt’s giantsized models of human embryos – and, most importantly in the present context, they both stuck to some outdated ideas not shared by the majority of contemporaneous biologists: Haeckel remained Lamarckist, defending the inheritance of acquired characters throughout his life, and Blechschmidt strove to maintain the special status of Man by condemning any embryological interpretation or terminology suggesting his descent from other vertebrates. (Sander 2002, p. 531, emphasis mine)

So Blechschmidt apparently had issues with accepting the evolutionary development of humans from other animals. As I said an outlier with an extreme minority view.

Brad: in the end, this is probably an argument evolutionists should give up on.

You’ll understand, I hope, that this evolutionist will not be taking advice on what is or is not valid evidence from a creationist.

Brad: But keep right on with it if you insist, it just makes dogmatic evolutionists sound nuts.

Only to those too ignorant to know better and/or too intellectually lazy to look up the evidence for themselves.

*Note: I am thinking primarily of the first stage shown in the comparative embryo illustration in the 3rd edition of his Anthropogenie (1874)

References

Freeman, Brian (2001) “The Myth of the “Biogenetic Law””, The American Biology Teacher 63(2):84

Gould, Stephen Jay (1991) “The Case of the Creeping Fox Terrier Clone”, in: Bully for Brontosaurus: Reflections in Natural History,  W.W. Norton & Co., pp. 155-167

O’Rahilly, Ronan & Müller, Fabiola (2001) Human Embryology & Teratology, 3rd Edition, Wiley-Liss

Richardson, Michael & Keuck, Gerhard (2002) “Haeckel’s ABC of evolution and development“, Biological Reviews, 77: 495-528

Sander, Klaus (2002) “Ernst Haeckel’s ontogenetic recapitulation: irritation and incentive from 1866 to our time”, Annals of Anatomy 184:523-533

We wouldn’t want to be accused of viewpoint discrimination…

Another Pharyngula podcast with yours truly

The first part was on intelligent design creationists latest attacks on some of the genetic evidence for human evolution. The second was a ostensibly on humanism but strayed into issues surrounding the internecine warfare going on in the skeptic/atheist community over issues of feminism (which I will not touch with a light-year long pole) and progressive politics. Being of a slightly libertarian bent, I bit my tongue and let the anti-libertarian jibs go by (I am used to being casually libeled and slandered by my liberal Democrat friends).

Goodbye Skip

From left to right, Glenn Branch, Skip Evans and myself at the offices of the NCSE (2003).

I just heard from my friend Ed Brayton that Skip Evans, former National Center for Science Education, Network Project Director (a job I applied for after he left) and veteran of the creation/evolution debate has died due to heart problems. My condolences go out to Skip’s close friends and family.

He will be missed.

For more information see:

A Death in the Family: Skip Evans by Wesley Elsberry.

Skip Evans dies by the NCSE

Creationist foists “fraudulent” embryo picture on his readers

I decided I am not going to bury the lead on this one. Brian Thomas of the Institute for Creation Research (ICR) just posted another in a long line of creationist screeds attacking the evidence for evolution from comparative embryology, which as usual claims that the evidence is based on fraud and pins much of the blame for it on 19th century biologist Ernst Haeckel.

I began writing a rebuttal straight away but then I happened to take a second look at the bright pink image of an embryo atop the article and it brought me to a sudden halt. So, having backed up, let me start again.

Thomas: German zoologist Ernst Haeckel is perhaps most famous for defending evolution with the argument that creatures replay their evolutionary past when developing in the womb. …In his zeal to promote evolution, Haeckel foisted faulty embryo sketches onto his readers, and the zeal of his followers has perpetuated those falsehoods for over a century. (Thomas 2012, emphasis mine)

Yeah, about that…

Irony-Meter-Explode

That’s right, yet another irony meter has been reduced to subatomic particles by a creationist.

Read on»

Fuzzy thinking about fuzzy dinosaurs

A visual approximation.

Casey Luskin, the Discoveryless Institute’s resident attack chihuahua, is on a roll. This time he’s gone off on a tangent about a recent find of yet another dinosaur fossil with evidence of protofeathers, Sciurumimus albersdoerferi and dinosaur evolution in general.

Luskin: The media that loyally serve Big Science are at it again, overstating the finds of a scientific paper to promote an evolutionary icon. This time, the icon is feathered dinosaurs, representing the purported ancestral relationship between dinos and birds. (Luskin 2012)

Ah, if only. If only Mr. Luskin’s conspiratorial fantasy were true and the media was that on the ball. The fact of the matter is that defenders of science education like me often cringe at the mischaracterizations and overstatements that come out of the popular media regarding evolution. I am constantly shaking my head and yelling at the TV or radio “no, that’s not what that means at all”, or words to that effect.

I wish I had a nickel (because being underemployed I could really use the money) for every time a silly reporter, while talking about some fossil discovery, described it as “overthrowing everything we thought we knew about the evolution of X”.

That is absolute bollocks, 99% of the time.

Read on»